giving the two forms slightly different shapes. As a physicist, Franklin was initially more
interested in the A-form because of its more crystalline structure. Wilkins, meanwhile,
preferred the B-form, as DNA inside cells exists in an aqueous environment. Franklin later
shifted her focus to the B-form as well. Detailed calculations indicated that if the bases were
separated by 3.4 Å, there would be ten bases per turn of the helix. It was also theoretically
possible to have twenty bases per turn if the structure involved a double repetition. For a long
time, Watson tried to cram twenty bases per turn into his models, reducing the spacing between
bases to 1.7 Å.
Based on information available from earlier studies, Watson and Crick began constructing
possible models using cardboard cutouts representing the bases and other nucleotide
components, arranging the pieces much like solving a puzzle. In November 1951, Watson
attended a seminar in which Franklin presented her X-ray diffraction data, suggesting that DNA
had a helical structure. Drawing on this information, Watson and Crick constructed their first
model of DNA and showed it to Franklin. The first model of DNA that Watson and Crick
produced was an unsuccessful three-helical structure, a triple helix. As Cobb notes, “It’s a
disaster. Franklin takes one look at it and laughs.” Franklin identified a critical flaw: their model
placed the phosphate–sugar backbone inside the helix. One of the corrections required was that
the hydrophilic phosphate–sugar backbones must lie on the outside of the molecule, where they
could interact with water, while the hydrophobic bases should be oriented towards the
interior.[5] Sir Lawrence Bragg, head of the Cavendish Laboratory, was embarrassed by Watson
and Crick’s blunder and temporarily halted their work.[5] However, a series of developments
soon prompted him to reconsider the decision. By that time, Franklin was preparing to leave
Wilkins’ lab for another position, and her departure created a vacancy in the DNA research
project. Bragg was also aware that Pauling was competing to solve the structure of DNA, and
given their longstanding rivalry, he allowed Watson and Crick to resume their investigations.
Crick’s advisor, Max Perutz, then permitted him to read a summary report of Franklin’s data.
Watson had also seen these results earlier, during Franklin’s 1951 lecture at King’s College,
but he lacked the expertise to interpret X-ray crystallography data. Crick, with his background
in X-ray diffraction, immediately recognized that Franklin’s findings supported a “twisted
ladder” configuration, with two nucleotide chains running in opposite directions. Their
progress was further hindered by an incorrect understanding of the atomic configuration of
thymine and guanine rings. This was because the reference books they relied on depicted the
bases in incorrect tautomeric forms. It was Jerry Donohue who provided the final cue and
pointed out that they were using the wrong base configurations and suggested the correct
forms.[11] His advice provided the crucial intuition they needed to revise their model. From
there, everything fell into place. On the advice of Donohue, Watson prepared new cutouts based
on accurate atomic configurations and placed the two strands of the molecule in the opposite
direction i.e., antiparallel to each other, a small crystallographic detail that Crick had long been
fixated on and which Watson had not fully understood. One Saturday morning, Watson turned
one of the cardboard base cutouts over and suddenly saw that A pairs with T, and C pairs with
G. This pairing created rungs of constant width between the two phosphate backbones in their
model. It also became clear that hydrogen bonds form between these base pairs, giving the
molecule a consistent and accurate shape. This adjustment proved decisive as the
complementary bases now fit together perfectly (A with T and C with G). The base-pairing
now made perfect sense as the model satisfied Chargaff’s rule.[5]
Significance of hydrogen bonds
Initially, Watson and Crick believed that hydrogen bonds played no role in the interactions
between the bases, but they later recognised their critical importance in the structure of DNA.
It is now known that the complementary base pairs in DNA are held together by hydrogen
bonds.[3] Adenine and thymine share two hydrogen bonds, while cytosine and guanine are
linked by three. Although individual hydrogen bonds are weak, the presence of a large number
of hydrogen bonds can provide considerable stability to the DNA molecule. Another advantage
of hydrogen bonding is that it allows the two DNA strands to separate readily during
replication. Moreover, hydrogen bonds contribute to the specificity of base pairing; they form
only between complementary bases. For example, hydrogen bonds can be formed between A
and T or between G and C, but not between A and G or between T and C. This pairing rule is
of considerable biological interest as it suggested a copying mechanism for DNA.[5,8] The
specificity in base pairing also ensures that genetic information is accurately copied during